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UMD Biostatistics

Data Analysis and Statistics for Biological Sciences

Welcome to the course website for UMD Biostatistics. Here you’ll find the syllabus, schedule, lecture materials, activities, and assignments.

Welcome to Ecological Statistics at UMD!

This course teaches the fundamentals of statistics and data analysis for biological sciences. Using R and the tidyverse, you’ll learn how to analyze and visualize data effectively to answer scientific questions.

Course Materials

Materials for this course are organized into lectures, in-class activities, and homework assignments. All materials are available through this website and may be on canvas website at school.

Course Schedule

Week 1

01 - Introduction - Start with R

  • Readings:
    • R4 DataScience Intro
    • R4 DataScience Visualization
  • PowerPoint: Lecture 1 PowerPoint
  • Activity: Lecture 1 Activity
  • Homework: Week 1 Homework

02 - Project Design and Graphing data - GGPLOT

  • Readings: R4 DataScience Tidy Data
  • PowerPoint: PowerPoint
  • Activity: Activity

Week 2

03 - Descriptive Stats and Wrangling

  • PowerPoint: PowerPoint
  • Activity: Activity
  • Homework: Week 2 Homework

04 - Probability and Inference I - z distributions

  • PowerPoint: PowerPoint
  • Activity: Activity

Week 3

05 - Probability and Inference II - t distribution

  • PowerPoint: PowerPoint
  • Activity: Activity
  • Homework: Week 3 Homework

06 - T-Tests

  • PowerPoint: PowerPoint
  • Activity: Activity

Week 4

07 - Non Parametric T-Tests

  • PowerPoint: PowerPoint
  • Activity: Activity
  • Homework: Week 4 Homework

08 - Study Design for more than T-Tests - Sampling

  • PowerPoint: PowerPoint
  • Activity: Activity

Week 5

09 - Correlation vs Linear Models - Regression I

  • PowerPoint: PowerPoint
  • Activity: Activity
  • Homework: Week 5 Homework

Week 6

10 - Multiple Regression

  • PowerPoint: PowerPoint
  • Activity: Activity
  • Homework: Week 6 Homework

11 - Analysis of Variance

  • PowerPoint: PowerPoint
  • Activity: Activity
  • Homework: Week 7 Homework

Week 7

12 - Analysis of Variance - 2 way ANOVA

  • PowerPoint: PowerPoint
  • Activity: Activity
  • Homework: Week 8 Homework

13 - Analysis of Variance - nested ANOVAs

  • PowerPoint: PowerPoint
  • Activity: Activity
  • Homework: Week 9 Homework

Week 8

14 - GLM and Logistic Regression - What if assumptions Fail

  • PowerPoint: PowerPoint
  • Activity: Activity

15 - ANCOVA - Analysis of Covariance

  • PowerPoint: PowerPoint
  • Activity: Activity
  • Homework: Week 10 Homework

Week 9

16 - Multivariate Statistics

  • PowerPoint: PowerPoint
  • Activity: Activity

17 - Principal Component Analysis - PCA

  • PowerPoint: PowerPoint
  • Activity: Activity

Week 10

18 - NMDS - CLUSTER ANALYSIS - HYPOTHESES

  • PowerPoint: PowerPoint
  • Activity: Activity

19 - Review

  • PowerPoint: PowerPoint

Order of topics is subject to change depending on the progress of the class. Changes to the class schedule will be announced in class.

Readings

  • R for Data Science by Hadley Wickham

  • Whitlock and Schluter The Analysis of Biological Data - 3rd edition

Helpful Links for resources

I have put together a page of helpful links that might be of great help as you move through the class

Course Schedule and Syllabus

I have put together a set of all statistical tests we have done

Below is a link to all the statistical tests that we are covering in the class. These should be helpful to accomplish most of the statistics you will need to do. The format of all of these tests is:

  • type of data for the test
  • hypotheses being tests
  • assumptions of the test
  • the test itself and interpretation of the output
  • tests of assumptions
  • how to make a final publication quality plot
  • how to write up the results of your output

Questions or Issues?

If you have questions about the course or the website, please contact me at wlperry@d.umn.edu

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